Interactive plots for Rsim

Interactive plots for Rsim plot using plotly:: package and tidyverse::

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Usage

rsimplotviz(
  Rsim.output,
  eco.name = NULL,
  spname = "all",
  rel_bio = FALSE,
  palette = "rsim_pal_dark"
)

Arguments

Rsim.output

An object of class Rsim.

eco.name

Optional name of the ecosystem.

spname

A character vector of species names to plot. If "all", all species will be plotted and rel_bio will use the default FALSE.

rel_bio

Logical value of whether to plot a single group biomass as relative or absolute value.

palette

A character vector of colors to use.

Value

An interactive plotly object

Contributors

rsim.plot function from Rpath by Kerim Aydin

Examples

if (FALSE) { # \dontrun{
# create the Rsim object
runObj <- Rpath::rsim.scenario(Rpath::rpath(Rpath::REco.params), Rpath::REco.params, years= 1:50)
Rsim.output <- Rpath::rsim.run(runObj, years= 1:50)

# plot the Rsim object two default color blind friendly palettes
rsimplotviz(Rsim.output, eco.name= "Anchovy Bay", spname = "all",
palette= "rsim_pal_dark")
rsimplotviz(Rsim.output, eco.name= "Anchovy Bay", spname = "all",
palette= "rsim_pal_light")
rsimplotviz(Rsim.output, eco.name= "Anchovy Bay", spname = "Foragefish2",
rel_bio=FALSE, palette= "rsim_pal_light")

} # }